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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_906 ShaoY_2019_ERR3405831_bin.2_k141_906_2 1335 3131 + 9.B.33.1.1
TF ShaoY_2019_ERR3405831_bin.2_k141_906 ShaoY_2019_ERR3405831_bin.2_k141_906_3 3118 4674 + HTH_AraC | HTH_AraC
STP ShaoY_2019_ERR3405831_bin.2_k141_906 ShaoY_2019_ERR3405831_bin.2_k141_906_4 4811 6109 + SBP_bac_1
TC ShaoY_2019_ERR3405831_bin.2_k141_906 ShaoY_2019_ERR3405831_bin.2_k141_906_5 6137 6979 + 3.A.1.1.20
TC ShaoY_2019_ERR3405831_bin.2_k141_906 ShaoY_2019_ERR3405831_bin.2_k141_906_6 6980 7813 + 3.A.1.1.34
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_906 ShaoY_2019_ERR3405831_bin.2_k141_906_7 7944 9731 + GH78
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_906_2
Type: TC
Location: 1335 - 3131 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_906_3
Type: TF
Location: 3118 - 4674 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_906_4
Type: STP
Location: 4811 - 6109 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_906_5
Type: TC
Location: 6137 - 6979 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_906_6
Type: TC
Location: 6980 - 7813 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_906_7
Type: CAZyme
Location: 7944 - 9731 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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