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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_174 206941 208737 + 8.A.59.2.1
TF ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_175 208727 210346 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_176 210427 211794 + 3.A.1.1.44
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_177 211811 212701 + 3.A.1.1.42
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_178 212701 213528 + 3.A.1.1.28
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_179 213555 215600 + GH151
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_174
Type: TC
Location: 206941 - 208737 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_175
Type: TF
Location: 208727 - 210346 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_176
Type: TC
Location: 210427 - 211794 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_177
Type: TC
Location: 211811 - 212701 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_178
Type: TC
Location: 212701 - 213528 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_179
Type: CAZyme
Location: 213555 - 215600 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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