Cluster: ShaoY_2019_ERR3405831_bin.2_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_02098
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_135 | 153614 | 154957 | + | GH30_2 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_136 | 155220 | 156200 | + | LacI |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_137 | 156600 | 158069 | + | SBP_bac_8 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_138 | 158071 | 158967 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_139 | 158967 | 159797 | + | 3.A.1.1.45 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_140 | 159802 | 161487 | + | GH13_31 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_141 | 161734 | 162936 | + | Cons_hypoth95 | MTS | PrmA | Methyltransf_15 | Methyltrans_SAM | Methyltransf_25 | Methyltransf_31 | PUA_3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2160 | ShaoY_2019_ERR3405831_bin.2_k141_2160_142 | 163358 | 164800 | + | 2.A.66.1.32 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_135
Type: CAZyme
Location: 153614 - 154957 (+)
Type: CAZyme
Location: 153614 - 154957 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_136
Type: TF
Location: 155220 - 156200 (+)
Type: TF
Location: 155220 - 156200 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_137
Type: pfam
Location: 156600 - 158069 (+)
Type: pfam
Location: 156600 - 158069 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_138
Type: TC
Location: 158071 - 158967 (+)
Type: TC
Location: 158071 - 158967 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_139
Type: TC
Location: 158967 - 159797 (+)
Type: TC
Location: 158967 - 159797 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_140
Type: CAZyme
Location: 159802 - 161487 (+)
Type: CAZyme
Location: 159802 - 161487 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_141
Type: pfam
Location: 161734 - 162936 (+)
Type: pfam
Location: 161734 - 162936 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_142
Type: TC
Location: 163358 - 164800 (+)
Type: TC
Location: 163358 - 164800 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.