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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_20 18400 20529 + 8.A.59.4.1
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_21 20615 20767 - NULL(UNKNOWN)
[View Structural Homologs]
STP ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_22 20910 21149 + FeoA
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_23 21162 23309 + 9.A.8.1.5
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_24 23740 24987 - GH29
TF ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_25 25118 25963 + HTH_AraC
pfam ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_26 26227 27390 + Mucin_bdg | Mucin_bdg
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_27 27789 28952 + 3.A.1.2.3
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_28 29020 30519 + 3.A.1.2.3
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_29 30557 31786 + 3.A.1.2.3
TF ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_30 31920 33548 + HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_31 33541 35382 + 9.B.33.1.1
STP ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_32 35379 36326 + Peripla_BP_1
TC ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_33 36342 37379 + 3.A.1.2.3
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_34 37529 39097 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_2160 ShaoY_2019_ERR3405831_bin.2_k141_2160_35 39287 44173 + CBM51 | GH27
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_20
Type: TC
Location: 18400 - 20529 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_21
Type:
Location: 20615 - 20767 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_22
Type: STP
Location: 20910 - 21149 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_23
Type: TC
Location: 21162 - 23309 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_24
Type: CAZyme
Location: 23740 - 24987 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_25
Type: TF
Location: 25118 - 25963 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_26
Type: pfam
Location: 26227 - 27390 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_27
Type: TC
Location: 27789 - 28952 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_28
Type: TC
Location: 29020 - 30519 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_29
Type: TC
Location: 30557 - 31786 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_30
Type: TF
Location: 31920 - 33548 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_31
Type: TC
Location: 33541 - 35382 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_32
Type: STP
Location: 35379 - 36326 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_33
Type: TC
Location: 36342 - 37379 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_34
Type:
Location: 37529 - 39097 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2160_35
Type: CAZyme
Location: 39287 - 44173 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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