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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_2 1016 3163 - GH3
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_3 3196 5535 - GH31_3
TC ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_4 5814 7622 + 8.A.59.2.1
TF ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_5 7619 9166 + HTH_AraC | HTH_AraC
pfam ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_6 9228 9878 - Lipase_GDSL | Lipase_GDSL_2
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_7 9920 11938 - GH42
pfam ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_8 12056 13843 - SBP_bac_1
TC ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_9 13920 14837 - 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_10 14857 15807 - 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_11 16066 16689 + 9.B.28.1.2
pfam ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_12 16879 18387 - IMPDH | CBS
TC ShaoY_2019_ERR3405831_bin.2_k141_1789 ShaoY_2019_ERR3405831_bin.2_k141_1789_13 18512 20107 - 2.A.36.6.11
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_2
Type: CAZyme
Location: 1016 - 3163 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_3
Type: CAZyme
Location: 3196 - 5535 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_4
Type: TC
Location: 5814 - 7622 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_5
Type: TF
Location: 7619 - 9166 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_6
Type: pfam
Location: 9228 - 9878 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_7
Type: CAZyme
Location: 9920 - 11938 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_8
Type: pfam
Location: 12056 - 13843 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_9
Type: TC
Location: 13920 - 14837 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_10
Type: TC
Location: 14857 - 15807 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_11
Type: TC
Location: 16066 - 16689 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_12
Type: pfam
Location: 16879 - 18387 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1789_13
Type: TC
Location: 18512 - 20107 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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