Cluster: ShaoY_2019_ERR3405831_bin.2_CGC23
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_00277
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_75 | 101759 | 102916 | + | GH88 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_76 | 102986 | 104485 | - | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_77 | 104478 | 106214 | - | 8.A.59.2.1 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_78 | 106492 | 107802 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_79 | 107995 | 108894 | + | 3.A.1.1.25 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_80 | 108891 | 109724 | + | 3.A.1.1.18 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_81 | 109755 | 112289 | + | GH2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_82 | 112308 | 115457 | + | GH38 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_75
Type: CAZyme
Location: 101759 - 102916 (+)
Type: CAZyme
Location: 101759 - 102916 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_76
Type: TF
Location: 102986 - 104485 (-)
Type: TF
Location: 102986 - 104485 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_77
Type: TC
Location: 104478 - 106214 (-)
Type: TC
Location: 104478 - 106214 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_78
Type: STP
Location: 106492 - 107802 (+)
Type: STP
Location: 106492 - 107802 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_79
Type: TC
Location: 107995 - 108894 (+)
Type: TC
Location: 107995 - 108894 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_80
Type: TC
Location: 108891 - 109724 (+)
Type: TC
Location: 108891 - 109724 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_81
Type: CAZyme
Location: 109755 - 112289 (+)
Type: CAZyme
Location: 109755 - 112289 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_82
Type: CAZyme
Location: 112308 - 115457 (+)
Type: CAZyme
Location: 112308 - 115457 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.