Cluster: ShaoY_2019_ERR3405831_bin.2_CGC22
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_00609
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_44 | 55831 | 56706 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_45 | 56696 | 57628 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_46 | 57702 | 59066 | - | 3.A.1.1.40 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_47 | 59445 | 60185 | + | HTH_DeoR |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_48 | 60342 | 61079 | + | HTH_DeoR |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_49 | 61308 | 63500 | - | GH36 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_50 | 63683 | 64513 | - | 3.A.1.1.36 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_51 | 64528 | 65424 | - | 3.A.1.1.20 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_44
Type: TC
Location: 55831 - 56706 (-)
Type: TC
Location: 55831 - 56706 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_45
Type: TC
Location: 56696 - 57628 (-)
Type: TC
Location: 56696 - 57628 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_46
Type: TC
Location: 57702 - 59066 (-)
Type: TC
Location: 57702 - 59066 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_47
Type: TF
Location: 59445 - 60185 (+)
Type: TF
Location: 59445 - 60185 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_48
Type: TF
Location: 60342 - 61079 (+)
Type: TF
Location: 60342 - 61079 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_49
Type: CAZyme
Location: 61308 - 63500 (-)
Type: CAZyme
Location: 61308 - 63500 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_50
Type: TC
Location: 63683 - 64513 (-)
Type: TC
Location: 63683 - 64513 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_51
Type: TC
Location: 64528 - 65424 (-)
Type: TC
Location: 64528 - 65424 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.