Cluster: ShaoY_2019_ERR3405831_bin.2_CGC21
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_08313
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_23 | 25084 | 26145 | - | 3.A.1.6.3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_24 | 26145 | 26969 | - | 3.A.1.6.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_25 | 26983 | 27816 | - | 3.A.1.6.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_26 | 27885 | 28967 | - | 3.A.1.6.1 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_27 | 29147 | 29299 | - | DUF2292 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_28 | 29708 | 31057 | - | MatE | MatE | MurJ |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_29 | 31118 | 33583 | - | GH38 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_30 | 33796 | 34518 | - | Lactamase_B |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_31 | 34910 | 36409 | - | GH13_18 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_32 | 36478 | 37068 | - | Aldolase_II |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_33 | 37146 | 39221 | - | GH36 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_34 | 39252 | 42083 | - | GH2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_35 | 42137 | 43300 | - | URO-D |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1519 | ShaoY_2019_ERR3405831_bin.2_k141_1519_36 | 43553 | 46909 | - | GH38 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_23
Type: TC
Location: 25084 - 26145 (-)
Type: TC
Location: 25084 - 26145 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_24
Type: TC
Location: 26145 - 26969 (-)
Type: TC
Location: 26145 - 26969 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_25
Type: TC
Location: 26983 - 27816 (-)
Type: TC
Location: 26983 - 27816 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_26
Type: TC
Location: 27885 - 28967 (-)
Type: TC
Location: 27885 - 28967 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_27
Type: pfam
Location: 29147 - 29299 (-)
Type: pfam
Location: 29147 - 29299 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_28
Type: pfam
Location: 29708 - 31057 (-)
Type: pfam
Location: 29708 - 31057 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_29
Type: CAZyme
Location: 31118 - 33583 (-)
Type: CAZyme
Location: 31118 - 33583 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_30
Type: pfam
Location: 33796 - 34518 (-)
Type: pfam
Location: 33796 - 34518 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_31
Type: CAZyme
Location: 34910 - 36409 (-)
Type: CAZyme
Location: 34910 - 36409 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_32
Type: pfam
Location: 36478 - 37068 (-)
Type: pfam
Location: 36478 - 37068 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_33
Type: CAZyme
Location: 37146 - 39221 (-)
Type: CAZyme
Location: 37146 - 39221 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_34
Type: CAZyme
Location: 39252 - 42083 (-)
Type: CAZyme
Location: 39252 - 42083 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_35
Type: pfam
Location: 42137 - 43300 (-)
Type: pfam
Location: 42137 - 43300 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1519_36
Type: CAZyme
Location: 43553 - 46909 (-)
Type: CAZyme
Location: 43553 - 46909 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.