Cluster: ShaoY_2019_ERR3405831_bin.2_CGC20
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_1 | 194 | 790 | - | 2.A.115.2.14 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_2 | 818 | 2671 | - | 3.A.1.135.6 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_3 | 2668 | 4821 | - | 3.A.1.135.6 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_4 | 4805 | 5284 | - | MarR |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_5 | 5608 | 6306 | + | Pirin | Cupin_2 | Pirin_C_2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_6 | 6419 | 7372 | - | GH43_26 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_7 | 7403 | 8392 | - | LacI |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_8 | 8478 | 9992 | - | GH51_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_9 | 10114 | 10941 | - | 3.A.1.1.36 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_10 | 10934 | 11836 | - | 3.A.1.1.20 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1507 | ShaoY_2019_ERR3405831_bin.2_k141_1507_11 | 11988 | 13385 | - | 3.A.1.1.16 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_1
Type: TC
Location: 194 - 790 (-)
Type: TC
Location: 194 - 790 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_2
Type: TC
Location: 818 - 2671 (-)
Type: TC
Location: 818 - 2671 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_3
Type: TC
Location: 2668 - 4821 (-)
Type: TC
Location: 2668 - 4821 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_4
Type: TF
Location: 4805 - 5284 (-)
Type: TF
Location: 4805 - 5284 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_5
Type: pfam
Location: 5608 - 6306 (+)
Type: pfam
Location: 5608 - 6306 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_6
Type: CAZyme
Location: 6419 - 7372 (-)
Type: CAZyme
Location: 6419 - 7372 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_7
Type: TF
Location: 7403 - 8392 (-)
Type: TF
Location: 7403 - 8392 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_8
Type: CAZyme
Location: 8478 - 9992 (-)
Type: CAZyme
Location: 8478 - 9992 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_9
Type: TC
Location: 10114 - 10941 (-)
Type: TC
Location: 10114 - 10941 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_10
Type: TC
Location: 10934 - 11836 (-)
Type: TC
Location: 10934 - 11836 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1507_11
Type: TC
Location: 11988 - 13385 (-)
Type: TC
Location: 11988 - 13385 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.