Cluster: ShaoY_2019_ERR3405831_bin.2_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_02638
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_27 | 47211 | 47576 | + | 9.B.143.3.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_28 | 47731 | 49008 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_29 | 48961 | 49476 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_30 | 49654 | 50988 | - | 2.A.66.1.13 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_31 | 51044 | 51862 | - | MerR |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_32 | 52217 | 53062 | + | PRD | PRD | CAT_RBD |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_33 | 53151 | 55121 | + | 4.A.1.2.6 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_34 | 55133 | 56566 | + | GH1 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_35 | 56570 | 56827 | + | PTS-HPr |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_36 | 56872 | 58494 | + | 8.A.7.1.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_27
Type: TC
Location: 47211 - 47576 (+)
Type: TC
Location: 47211 - 47576 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_28
Type:
Location: 47731 - 49008 (+)
Type:
Location: 47731 - 49008 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_29
Type:
Location: 48961 - 49476 (-)
Type:
Location: 48961 - 49476 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_30
Type: TC
Location: 49654 - 50988 (-)
Type: TC
Location: 49654 - 50988 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_31
Type: TF
Location: 51044 - 51862 (-)
Type: TF
Location: 51044 - 51862 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_32
Type: pfam
Location: 52217 - 53062 (+)
Type: pfam
Location: 52217 - 53062 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_33
Type: TC
Location: 53151 - 55121 (+)
Type: TC
Location: 53151 - 55121 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_34
Type: CAZyme
Location: 55133 - 56566 (+)
Type: CAZyme
Location: 55133 - 56566 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_35
Type: STP
Location: 56570 - 56827 (+)
Type: STP
Location: 56570 - 56827 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_36
Type: TC
Location: 56872 - 58494 (+)
Type: TC
Location: 56872 - 58494 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.