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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_109 126336 132425 - GH29
pfam ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_110 132628 133833 - Peripla_BP_1 | Peripla_BP_4
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_111 133927 134916 - 3.A.1.2.11
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_112 134935 136428 - 3.A.1.2.20
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_113 136867 137853 - 3.A.1.2.20
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_114 137840 139648 - 8.A.59.2.1
TF ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_115 139652 141256 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_116 141379 142428 - 2.A.86.1.3
pfam ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_117 142701 143408 - PseudoU_synth_2
pfam ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_118 143432 144013 - Methyltransf_5 | rRNA_methylase | Methyltransf_31
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_119 144325 145260 + 2.A.19.5.2
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_120 145396 146148 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_121 146162 146917 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405831_bin.2_k141_1456 ShaoY_2019_ERR3405831_bin.2_k141_1456_122 146929 147777 - 3.A.1.132.1
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_109
Type: CAZyme
Location: 126336 - 132425 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_110
Type: pfam
Location: 132628 - 133833 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_111
Type: TC
Location: 133927 - 134916 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_112
Type: TC
Location: 134935 - 136428 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_113
Type: TC
Location: 136867 - 137853 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_114
Type: TC
Location: 137840 - 139648 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_115
Type: TF
Location: 139652 - 141256 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_116
Type: TC
Location: 141379 - 142428 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_117
Type: pfam
Location: 142701 - 143408 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_118
Type: pfam
Location: 143432 - 144013 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_119
Type: TC
Location: 144325 - 145260 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_120
Type:
Location: 145396 - 146148 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_121
Type:
Location: 146162 - 146917 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_122
Type: TC
Location: 146929 - 147777 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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