Cluster: ShaoY_2019_ERR3405831_bin.2_CGC18
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_47 | 54692 | 56800 | - | GH3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_48 | 57180 | 58172 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_49 | 58505 | 60064 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_50 | 60065 | 61897 | - | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_51 | 62013 | 62861 | - | 3.A.1.1.34 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_52 | 62865 | 63767 | - | 3.A.1.1.7 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_53 | 63892 | 65310 | - | 3.A.1.1.9 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_54 | 65679 | 67814 | - | CBM34 | GH13_39 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1456 | ShaoY_2019_ERR3405831_bin.2_k141_1456_55 | 68102 | 69904 | - | 3.A.16.1.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_47
Type: CAZyme
Location: 54692 - 56800 (-)
Type: CAZyme
Location: 54692 - 56800 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_48
Type:
Location: 57180 - 58172 (-)
Type:
Location: 57180 - 58172 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_49
Type: TF
Location: 58505 - 60064 (-)
Type: TF
Location: 58505 - 60064 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_50
Type: TC
Location: 60065 - 61897 (-)
Type: TC
Location: 60065 - 61897 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_51
Type: TC
Location: 62013 - 62861 (-)
Type: TC
Location: 62013 - 62861 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_52
Type: TC
Location: 62865 - 63767 (-)
Type: TC
Location: 62865 - 63767 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_53
Type: TC
Location: 63892 - 65310 (-)
Type: TC
Location: 63892 - 65310 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_54
Type: CAZyme
Location: 65679 - 67814 (-)
Type: CAZyme
Location: 65679 - 67814 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1456_55
Type: TC
Location: 68102 - 69904 (-)
Type: TC
Location: 68102 - 69904 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.