Cluster: ShaoY_2019_ERR3405831_bin.2_CGC15
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_11 | 10754 | 11965 | + | CE4 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_12 | 12092 | 13210 | - | CE9 |
| sulfatase | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_13 | 13233 | 13967 | - | S1_9 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_14 | 14027 | 14632 | - | CBM9_2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_15 | 15162 | 21488 | + | CBM32 | GH95 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_16 | 21721 | 23325 | - | CbiA |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_17 | 23667 | 25145 | - | DUF1846 | DUF1846_C |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1284 | ShaoY_2019_ERR3405831_bin.2_k141_1284_18 | 25342 | 27429 | + | 3.A.16.1.2 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_11
Type: CAZyme
Location: 10754 - 11965 (+)
Type: CAZyme
Location: 10754 - 11965 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_12
Type: CAZyme
Location: 12092 - 13210 (-)
Type: CAZyme
Location: 12092 - 13210 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_13
Type: sulfatase
Location: 13233 - 13967 (-)
Type: sulfatase
Location: 13233 - 13967 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_14
Type: pfam
Location: 14027 - 14632 (-)
Type: pfam
Location: 14027 - 14632 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_15
Type: CAZyme
Location: 15162 - 21488 (+)
Type: CAZyme
Location: 15162 - 21488 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_16
Type: STP
Location: 21721 - 23325 (-)
Type: STP
Location: 21721 - 23325 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_17
Type: pfam
Location: 23667 - 25145 (-)
Type: pfam
Location: 23667 - 25145 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1284_18
Type: TC
Location: 25342 - 27429 (+)
Type: TC
Location: 25342 - 27429 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.