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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC142

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_31 47976 50993 + GH106
TF ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_32 51126 53336 - HTH_AraC
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_33 53606 54955 + GH1
TC ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_34 55257 56849 + 3.A.1.1.10
TC ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_35 56967 57911 + 3.A.1.1.10
TC ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_36 57930 58847 + 3.A.1.1.10
TC ShaoY_2019_ERR3405831_bin.2_k141_7632 ShaoY_2019_ERR3405831_bin.2_k141_7632_37 58912 60396 - 8.A.59.2.1
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_31
Type: CAZyme
Location: 47976 - 50993 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_32
Type: TF
Location: 51126 - 53336 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_33
Type: CAZyme
Location: 53606 - 54955 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_34
Type: TC
Location: 55257 - 56849 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_35
Type: TC
Location: 56967 - 57911 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_36
Type: TC
Location: 57930 - 58847 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_7632_37
Type: TC
Location: 58912 - 60396 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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