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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC127

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_193 255148 255756 + 3.A.1.28.1
pfam ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_194 256068 256874 + CbiQ
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_195 256862 257722 + 3.A.1.26.7
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_196 257719 258561 + 3.A.1.23.2
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_197 258692 260245 - GH78
TF ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_198 260421 261473 - HTH_AraC
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_199 261587 263482 - GH172
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_200 263479 264771 - GH140
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_201 264937 267366 - GH2
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_202 267540 268907 - GH1
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_203 268920 269873 - CE7
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_204 269924 273610 - GH2
pfam ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_205 273691 274458 - DeoC
pfam ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_206 274514 276010 - FGGY_N | FGGY_C
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_207 276018 279179 - GH106
pfam ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_208 279195 280640 - Fucose_iso_C | Fucose_iso_N1 | Fucose_iso_N2
pfam ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_209 280641 281522 - AP_endonuc_2
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_210 281535 282635 - GH177
TF ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_211 282841 284451 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_212 284451 286292 + 8.A.59.2.1
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_213 286392 288170 - 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_214 288250 289119 - 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_6898 ShaoY_2019_ERR3405831_bin.2_k141_6898_215 289131 290048 - 3.A.1.1.29
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_193
Type: TC
Location: 255148 - 255756 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_194
Type: pfam
Location: 256068 - 256874 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_195
Type: TC
Location: 256862 - 257722 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_196
Type: TC
Location: 257719 - 258561 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_197
Type: CAZyme
Location: 258692 - 260245 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_198
Type: TF
Location: 260421 - 261473 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_199
Type: CAZyme
Location: 261587 - 263482 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_200
Type: CAZyme
Location: 263479 - 264771 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_201
Type: CAZyme
Location: 264937 - 267366 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_202
Type: CAZyme
Location: 267540 - 268907 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_203
Type: CAZyme
Location: 268920 - 269873 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_204
Type: CAZyme
Location: 269924 - 273610 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_205
Type: pfam
Location: 273691 - 274458 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_206
Type: pfam
Location: 274514 - 276010 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_207
Type: CAZyme
Location: 276018 - 279179 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_208
Type: pfam
Location: 279195 - 280640 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_209
Type: pfam
Location: 280641 - 281522 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_210
Type: CAZyme
Location: 281535 - 282635 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_211
Type: TF
Location: 282841 - 284451 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_212
Type: TC
Location: 284451 - 286292 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_213
Type: TC
Location: 286392 - 288170 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_214
Type: TC
Location: 288250 - 289119 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_215
Type: TC
Location: 289131 - 290048 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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