Cluster: ShaoY_2019_ERR3405831_bin.2_CGC126
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_171 | 223113 | 224114 | - | 3.A.1.2.14 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_172 | 224145 | 225770 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_173 | 225788 | 227188 | - | 9.B.33.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_174 | 227361 | 227456 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_175 | 227457 | 229097 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_176 | 229592 | 230611 | - | 3.A.1.2.25 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_177 | 230611 | 231678 | - | 3.A.1.2.14 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_178 | 231680 | 233191 | - | 3.A.1.2.23 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_179 | 233512 | 234669 | - | 3.A.1.2.14 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_180 | 234870 | 236507 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_181 | 236803 | 243258 | - | GH146 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_171
Type: TC
Location: 223113 - 224114 (-)
Type: TC
Location: 223113 - 224114 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_172
Type: TF
Location: 224145 - 225770 (-)
Type: TF
Location: 224145 - 225770 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_173
Type: TC
Location: 225788 - 227188 (-)
Type: TC
Location: 225788 - 227188 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_174
Type:
Location: 227361 - 227456 (-)
Type:
Location: 227361 - 227456 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_175
Type: TF
Location: 227457 - 229097 (-)
Type: TF
Location: 227457 - 229097 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_176
Type: TC
Location: 229592 - 230611 (-)
Type: TC
Location: 229592 - 230611 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_177
Type: TC
Location: 230611 - 231678 (-)
Type: TC
Location: 230611 - 231678 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_178
Type: TC
Location: 231680 - 233191 (-)
Type: TC
Location: 231680 - 233191 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_179
Type: TC
Location: 233512 - 234669 (-)
Type: TC
Location: 233512 - 234669 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_180
Type: TF
Location: 234870 - 236507 (-)
Type: TF
Location: 234870 - 236507 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_181
Type: CAZyme
Location: 236803 - 243258 (-)
Type: CAZyme
Location: 236803 - 243258 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.