Cluster: ShaoY_2019_ERR3405831_bin.2_CGC125
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_155 | 189521 | 190426 | - | 2.A.115.1.2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_156 | 190821 | 192167 | - | GH140 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_157 | 192676 | 193494 | + | GH43_18 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_158 | 193537 | 193881 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_159 | 193882 | 194955 | - | GH109 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_160 | 195506 | 204637 | - | GH43_22 | GH43_26 | GH43_27 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6898 | ShaoY_2019_ERR3405831_bin.2_k141_6898_161 | 204846 | 210059 | - | GH43_22 | GH43_34 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_155
Type: TC
Location: 189521 - 190426 (-)
Type: TC
Location: 189521 - 190426 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_156
Type: CAZyme
Location: 190821 - 192167 (-)
Type: CAZyme
Location: 190821 - 192167 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_157
Type: CAZyme
Location: 192676 - 193494 (+)
Type: CAZyme
Location: 192676 - 193494 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_158
Type: TF
Location: 193537 - 193881 (-)
Type: TF
Location: 193537 - 193881 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_159
Type: CAZyme
Location: 193882 - 194955 (-)
Type: CAZyme
Location: 193882 - 194955 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_160
Type: CAZyme
Location: 195506 - 204637 (-)
Type: CAZyme
Location: 195506 - 204637 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6898_161
Type: CAZyme
Location: 204846 - 210059 (-)
Type: CAZyme
Location: 204846 - 210059 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.