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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC120

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_92 91528 93189 - GH13_31
TF ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_93 93502 94527 - LacI
pfam ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_94 94727 95428 - Lactamase_B_3
TC ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_95 95457 96296 - 2.A.119.2.1
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_96 96447 97109 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_97 97309 106392 - CBM40 | CBM40 | GH33 | GH33
pfam ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_98 106714 106971 - Glyco_hydro_42C
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_99 107280 107666 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_100 107899 109569 - GH13_31
pfam ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_101 109754 111052 - RVT_1
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_102 111009 111179 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_103 111541 112380 - 3.A.1.1.27
TC ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_104 112377 113744 - 3.A.1.1.27
TC ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_105 113891 115165 - 3.A.1.1.27
TC ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_106 115529 117367 + 8.A.59.2.1
TF ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_107 117364 118968 + HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_6391 ShaoY_2019_ERR3405831_bin.2_k141_6391_108 118983 120236 + 3.A.1.1.28
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_92
Type: CAZyme
Location: 91528 - 93189 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_93
Type: TF
Location: 93502 - 94527 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_94
Type: pfam
Location: 94727 - 95428 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_95
Type: TC
Location: 95457 - 96296 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_96
Type:
Location: 96447 - 97109 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_97
Type: CAZyme
Location: 97309 - 106392 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_98
Type: pfam
Location: 106714 - 106971 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_99
Type:
Location: 107280 - 107666 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_100
Type: CAZyme
Location: 107899 - 109569 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_101
Type: pfam
Location: 109754 - 111052 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_102
Type:
Location: 111009 - 111179 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_103
Type: TC
Location: 111541 - 112380 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_104
Type: TC
Location: 112377 - 113744 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_105
Type: TC
Location: 113891 - 115165 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_106
Type: TC
Location: 115529 - 117367 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_107
Type: TF
Location: 117364 - 118968 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_108
Type: TC
Location: 118983 - 120236 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405831_bin.2_k141_6391_102 vegetarian > vegan 1.55941 0.00455

🧭 Explore Read Mapping of CGC

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