Cluster: ShaoY_2019_ERR3405831_bin.2_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_36 | 45322 | 48756 | - | GH106 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_37 | 48746 | 50290 | - | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_38 | 50290 | 52170 | - | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_39 | 52376 | 53209 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_40 | 53209 | 54084 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_41 | 54137 | 55585 | - | 3.A.1.1.42 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_42 | 55861 | 56481 | + | TetR_N |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1085 | ShaoY_2019_ERR3405831_bin.2_k141_1085_43 | 56478 | 57356 | + | 3.A.1.126.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_36
Type: CAZyme
Location: 45322 - 48756 (-)
Type: CAZyme
Location: 45322 - 48756 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_37
Type: TF
Location: 48746 - 50290 (-)
Type: TF
Location: 48746 - 50290 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_38
Type: TC
Location: 50290 - 52170 (-)
Type: TC
Location: 50290 - 52170 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_39
Type: TC
Location: 52376 - 53209 (-)
Type: TC
Location: 52376 - 53209 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_40
Type: TC
Location: 53209 - 54084 (-)
Type: TC
Location: 53209 - 54084 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_41
Type: TC
Location: 54137 - 55585 (-)
Type: TC
Location: 54137 - 55585 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_42
Type: STP
Location: 55861 - 56481 (+)
Type: STP
Location: 55861 - 56481 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_43
Type: TC
Location: 56478 - 57356 (+)
Type: TC
Location: 56478 - 57356 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.