Cluster: ShaoY_2019_ERR3405831_bin.2_CGC118
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_8 | 7834 | 13803 | - | CBM32 | GH84 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_9 | 13920 | 18710 | - | CBM32 | CBM32 | GH20 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_10 | 18938 | 20389 | - | 4.A.1.1.7 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_11 | 20466 | 20714 | - | PTS-HPr |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_12 | 20725 | 21204 | - | 4.A.1.2.2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_13 | 21222 | 22049 | - | PRD | PRD | CAT_RBD |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_14 | 22348 | 24369 | - | GH42 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_15 | 24408 | 25439 | - | LacI |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_16 | 25546 | 26352 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_17 | 26345 | 27226 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6391 | ShaoY_2019_ERR3405831_bin.2_k141_6391_18 | 27361 | 28743 | - | 3.A.1.1.4 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_8
Type: CAZyme
Location: 7834 - 13803 (-)
Type: CAZyme
Location: 7834 - 13803 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_9
Type: CAZyme
Location: 13920 - 18710 (-)
Type: CAZyme
Location: 13920 - 18710 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_10
Type: TC
Location: 18938 - 20389 (-)
Type: TC
Location: 18938 - 20389 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_11
Type: STP
Location: 20466 - 20714 (-)
Type: STP
Location: 20466 - 20714 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_12
Type: TC
Location: 20725 - 21204 (-)
Type: TC
Location: 20725 - 21204 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_13
Type: pfam
Location: 21222 - 22049 (-)
Type: pfam
Location: 21222 - 22049 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_14
Type: CAZyme
Location: 22348 - 24369 (-)
Type: CAZyme
Location: 22348 - 24369 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_15
Type: TF
Location: 24408 - 25439 (-)
Type: TF
Location: 24408 - 25439 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_16
Type: TC
Location: 25546 - 26352 (-)
Type: TC
Location: 25546 - 26352 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_17
Type: TC
Location: 26345 - 27226 (-)
Type: TC
Location: 26345 - 27226 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6391_18
Type: TC
Location: 27361 - 28743 (-)
Type: TC
Location: 27361 - 28743 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.