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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC117

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_114 145877 146596 - 3.A.11.1.4
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_115 146645 148873 - 3.A.7.16.1
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_116 149040 150029 - 1.A.33.1.5
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_117 150494 153721 - GH106
TF ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_118 153726 155231 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_119 155228 157069 - 9.B.33.1.1
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_120 157215 158045 - 3.A.1.1.41
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_121 158048 158905 - 3.A.1.1.7
STP ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_122 159137 160576 - SBP_bac_1
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_123 160703 162490 - GH2
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_124 162613 163437 - 3.A.1.1.36
TC ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_125 163434 164330 - 3.A.1.1.36
STP ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_126 164381 165805 - SBP_bac_1
TF ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_127 166192 167112 - HTH_5
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_6197 ShaoY_2019_ERR3405831_bin.2_k141_6197_128 167355 170060 - CBM67 | GH78
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_114
Type: TC
Location: 145877 - 146596 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_115
Type: TC
Location: 146645 - 148873 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_116
Type: TC
Location: 149040 - 150029 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_117
Type: CAZyme
Location: 150494 - 153721 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_118
Type: TF
Location: 153726 - 155231 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_119
Type: TC
Location: 155228 - 157069 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_120
Type: TC
Location: 157215 - 158045 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_121
Type: TC
Location: 158048 - 158905 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_122
Type: STP
Location: 159137 - 160576 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_123
Type: CAZyme
Location: 160703 - 162490 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_124
Type: TC
Location: 162613 - 163437 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_125
Type: TC
Location: 163434 - 164330 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_126
Type: STP
Location: 164381 - 165805 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_127
Type: TF
Location: 166192 - 167112 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_128
Type: CAZyme
Location: 167355 - 170060 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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