Cluster: ShaoY_2019_ERR3405831_bin.2_CGC114
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_00009
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_32 | 34622 | 35560 | - | GT2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_33 | 35565 | 37001 | - | LytR_cpsA_psr |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_34 | 37168 | 38568 | - | 9.B.18.1.1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_35 | 38669 | 39631 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_36 | 39678 | 41642 | - | GT2 | GT2 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_37 | 41635 | 42816 | - | Aminotran_1_2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_38 | 42957 | 45695 | - | YfhO |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_39 | 45804 | 48251 | - | GT2 | GT2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_40 | 48288 | 51332 | - | GT2 | GT2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_41 | 51366 | 52286 | - | RrnaAD | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_42 | 52345 | 53640 | - | 3.A.1.103.6 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_43 | 53656 | 54462 | - | 3.A.1.104.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_32
Type: CAZyme
Location: 34622 - 35560 (-)
Type: CAZyme
Location: 34622 - 35560 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_33
Type: pfam
Location: 35565 - 37001 (-)
Type: pfam
Location: 35565 - 37001 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_34
Type: TC
Location: 37168 - 38568 (-)
Type: TC
Location: 37168 - 38568 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_35
Type: CAZyme
Location: 38669 - 39631 (-)
Type: CAZyme
Location: 38669 - 39631 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_36
Type: CAZyme
Location: 39678 - 41642 (-)
Type: CAZyme
Location: 39678 - 41642 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_37
Type: STP
Location: 41635 - 42816 (-)
Type: STP
Location: 41635 - 42816 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_38
Type: pfam
Location: 42957 - 45695 (-)
Type: pfam
Location: 42957 - 45695 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_39
Type: CAZyme
Location: 45804 - 48251 (-)
Type: CAZyme
Location: 45804 - 48251 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_40
Type: CAZyme
Location: 48288 - 51332 (-)
Type: CAZyme
Location: 48288 - 51332 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_41
Type: pfam
Location: 51366 - 52286 (-)
Type: pfam
Location: 51366 - 52286 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_42
Type: TC
Location: 52345 - 53640 (-)
Type: TC
Location: 52345 - 53640 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_43
Type: TC
Location: 53656 - 54462 (-)
Type: TC
Location: 53656 - 54462 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.