Cluster: ShaoY_2019_ERR3405831_bin.2_CGC113
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_08347
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_16 | 17495 | 18679 | - | 3.D.10.1.4 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_17 | 18698 | 19606 | - | NadA |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_18 | 19749 | 20129 | + | GntR |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_19 | 20126 | 21001 | + | 3.A.1.147.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_20 | 20998 | 21645 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_21 | 21767 | 22717 | - | S09.UPW |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_22 | 22714 | 23835 | - | GT2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_6197 | ShaoY_2019_ERR3405831_bin.2_k141_6197_23 | 23914 | 24258 | - | 2.A.7.33.5 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_16
Type: TC
Location: 17495 - 18679 (-)
Type: TC
Location: 17495 - 18679 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_17
Type: pfam
Location: 18698 - 19606 (-)
Type: pfam
Location: 18698 - 19606 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_18
Type: TF
Location: 19749 - 20129 (+)
Type: TF
Location: 19749 - 20129 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_19
Type: TC
Location: 20126 - 21001 (+)
Type: TC
Location: 20126 - 21001 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_20
Type:
Location: 20998 - 21645 (+)
Type:
Location: 20998 - 21645 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_21
Type: peptidase
Location: 21767 - 22717 (-)
Type: peptidase
Location: 21767 - 22717 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_22
Type: CAZyme
Location: 22714 - 23835 (-)
Type: CAZyme
Location: 22714 - 23835 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_6197_23
Type: TC
Location: 23914 - 24258 (-)
Type: TC
Location: 23914 - 24258 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.