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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_14 13257 16439 - GH106
TF ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_15 16581 18068 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_16 18147 19919 - 9.B.33.1.1
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_17 20186 21016 - 3.A.1.1.42
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_18 21018 21944 - 3.A.1.1.7
STP ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_19 22102 23481 - SBP_bac_1
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_20 23761 24855 - GH172
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_21 25055 25879 - 3.A.1.1.39
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_22 25917 26798 - 3.A.1.1.20
STP ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_23 26871 28220 - SBP_bac_1
TF ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_24 28581 30086 - HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_25 30108 31874 - 9.B.33.1.1
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_26 32745 34547 - 9.B.33.1.1
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_27 34572 35399 - 3.A.1.1.42
TC ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_28 35399 36256 - 3.A.1.1.42
STP ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_29 36322 37707 - SBP_bac_1
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1085 ShaoY_2019_ERR3405831_bin.2_k141_1085_30 37810 39891 - GH78
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_14
Type: CAZyme
Location: 13257 - 16439 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_15
Type: TF
Location: 16581 - 18068 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_16
Type: TC
Location: 18147 - 19919 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_17
Type: TC
Location: 20186 - 21016 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_18
Type: TC
Location: 21018 - 21944 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_19
Type: STP
Location: 22102 - 23481 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_20
Type: CAZyme
Location: 23761 - 24855 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_21
Type: TC
Location: 25055 - 25879 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_22
Type: TC
Location: 25917 - 26798 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_23
Type: STP
Location: 26871 - 28220 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_24
Type: TF
Location: 28581 - 30086 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_25
Type: TC
Location: 30108 - 31874 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_26
Type: TC
Location: 32745 - 34547 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_27
Type: TC
Location: 34572 - 35399 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_28
Type: TC
Location: 35399 - 36256 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_29
Type: STP
Location: 36322 - 37707 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1085_30
Type: CAZyme
Location: 37810 - 39891 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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