Cluster: ShaoY_2019_ERR3405831_bin.2_CGC105
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_171 | 201723 | 203123 | - | GH4 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_172 | 203302 | 204210 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_173 | 204302 | 206368 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_174 | 206374 | 207222 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_175 | 207244 | 208152 | - | 3.A.1.1.11 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_171
Type: CAZyme
Location: 201723 - 203123 (-)
Type: CAZyme
Location: 201723 - 203123 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_172
Type: TF
Location: 203302 - 204210 (+)
Type: TF
Location: 203302 - 204210 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_173
Type:
Location: 204302 - 206368 (-)
Type:
Location: 204302 - 206368 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_174
Type: TC
Location: 206374 - 207222 (-)
Type: TC
Location: 206374 - 207222 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_175
Type: TC
Location: 207244 - 208152 (-)
Type: TC
Location: 207244 - 208152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.