Cluster: ShaoY_2019_ERR3405831_bin.2_CGC103
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_69 | 77703 | 79514 | - | 8.A.59.2.1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_70 | 79511 | 82519 | - | GH146 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_71 | 82714 | 88188 | - | GH146 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_72 | 88302 | 89636 | - | GH29 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_73 | 89668 | 90492 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_74 | 90489 | 91361 | - | 3.A.1.1.28 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_75 | 91522 | 92922 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5517 | ShaoY_2019_ERR3405831_bin.2_k141_5517_76 | 93265 | 95070 | + | 8.A.59.2.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_69
Type: TC
Location: 77703 - 79514 (-)
Type: TC
Location: 77703 - 79514 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_70
Type: CAZyme
Location: 79511 - 82519 (-)
Type: CAZyme
Location: 79511 - 82519 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_71
Type: CAZyme
Location: 82714 - 88188 (-)
Type: CAZyme
Location: 82714 - 88188 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_72
Type: CAZyme
Location: 88302 - 89636 (-)
Type: CAZyme
Location: 88302 - 89636 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_73
Type: TC
Location: 89668 - 90492 (-)
Type: TC
Location: 89668 - 90492 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_74
Type: TC
Location: 90489 - 91361 (-)
Type: TC
Location: 90489 - 91361 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_75
Type: STP
Location: 91522 - 92922 (-)
Type: STP
Location: 91522 - 92922 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5517_76
Type: TC
Location: 93265 - 95070 (+)
Type: TC
Location: 93265 - 95070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.