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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC102

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_89 110386 111057 - CE14
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_90 111158 111973 - 3.A.1.1.36
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_91 112018 112926 - 3.A.1.1.11
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_92 112990 114321 - 3.A.1.1.16
TF ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_93 114318 115313 - LacI
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_94 115655 117751 - 4.A.3.2.8
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_89
Type: CAZyme
Location: 110386 - 111057 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_90
Type: TC
Location: 111158 - 111973 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_91
Type: TC
Location: 112018 - 112926 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_92
Type: TC
Location: 112990 - 114321 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_93
Type: TF
Location: 114318 - 115313 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_94
Type: TC
Location: 115655 - 117751 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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