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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC101

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_59 74249 75304 + 3.A.15.2.1
TF ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_60 75394 76194 - HTH_AraC | HTH_AraC
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_61 76331 77653 + GH4
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_62 77788 78030 - NULL(UNKNOWN)
[View Structural Homologs]
TF ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_63 78557 79468 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_64 79535 80365 - 3.A.1.1.36
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_65 80380 81276 - 3.A.1.1.20
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_66 81439 82803 - 3.A.1.1.44
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_67 83611 84267 + 9.B.28.1.3
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_68 84370 86562 - GH36
STP ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_69 87083 88441 + Citrate_synt
TF ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_70 88443 88904 + MarR
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_71 89161 89799 - 2.A.115.2.14
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_72 89818 90528 - 3.A.1.4.10
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_73 90539 91297 - 3.A.1.4.10
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_74 91300 92271 - 3.A.1.4.8
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_75 92281 93168 - 3.A.1.4.10
TC ShaoY_2019_ERR3405831_bin.2_k141_5369 ShaoY_2019_ERR3405831_bin.2_k141_5369_76 93540 94784 - 3.A.1.4.10
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_59
Type: TC
Location: 74249 - 75304 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_60
Type: TF
Location: 75394 - 76194 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_61
Type: CAZyme
Location: 76331 - 77653 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_62
Type:
Location: 77788 - 78030 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_63
Type: TF
Location: 78557 - 79468 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_64
Type: TC
Location: 79535 - 80365 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_65
Type: TC
Location: 80380 - 81276 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_66
Type: TC
Location: 81439 - 82803 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_67
Type: TC
Location: 83611 - 84267 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_68
Type: CAZyme
Location: 84370 - 86562 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_69
Type: STP
Location: 87083 - 88441 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_70
Type: TF
Location: 88443 - 88904 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_71
Type: TC
Location: 89161 - 89799 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_72
Type: TC
Location: 89818 - 90528 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_73
Type: TC
Location: 90539 - 91297 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_74
Type: TC
Location: 91300 - 92271 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_75
Type: TC
Location: 92281 - 93168 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_76
Type: TC
Location: 93540 - 94784 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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