Cluster: ShaoY_2019_ERR3405831_bin.2_CGC100
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_32 | 39389 | 40771 | - | GH4 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_33 | 40802 | 41941 | - | URO-D |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_34 | 41938 | 43011 | - | CE19 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_35 | 43028 | 43918 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_36 | 43933 | 44874 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_37 | 44945 | 46657 | - | 3.A.1.1.10 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_38 | 46912 | 47847 | + | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5369 | ShaoY_2019_ERR3405831_bin.2_k141_5369_39 | 48146 | 55828 | - | GH101 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_32
Type: CAZyme
Location: 39389 - 40771 (-)
Type: CAZyme
Location: 39389 - 40771 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_33
Type: pfam
Location: 40802 - 41941 (-)
Type: pfam
Location: 40802 - 41941 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_34
Type: CAZyme
Location: 41938 - 43011 (-)
Type: CAZyme
Location: 41938 - 43011 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_35
Type: TC
Location: 43028 - 43918 (-)
Type: TC
Location: 43028 - 43918 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_36
Type: TC
Location: 43933 - 44874 (-)
Type: TC
Location: 43933 - 44874 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_37
Type: TC
Location: 44945 - 46657 (-)
Type: TC
Location: 44945 - 46657 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_38
Type: TF
Location: 46912 - 47847 (+)
Type: TF
Location: 46912 - 47847 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5369_39
Type: CAZyme
Location: 48146 - 55828 (-)
Type: CAZyme
Location: 48146 - 55828 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.