Cluster: ShaoY_2019_ERR3405831_bin.2_CGC1
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_02100
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_4 | 3000 | 4742 | - | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_5 | 4981 | 6378 | + | 3.A.1.1.21 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_6 | 6471 | 7343 | + | 3.A.1.1.36 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_7 | 7343 | 8170 | + | 3.A.1.1.31 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_8 | 8185 | 15036 | + | CBM51 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_9 | 15173 | 21775 | + | CBM51 | CBM51 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_10 | 21920 | 22894 | - | Transposase_31 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_11 | 23205 | 24944 | + | 3.A.1.135.7 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_12 | 24941 | 26734 | + | 3.A.1.135.7 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_13 | 27008 | 27895 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_14 | 28238 | 31033 | + | GH3 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_15 | 31221 | 33668 | + | GH129 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_16 | 33872 | 34579 | + | AlkZ-rel |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_17 | 34706 | 36538 | - | 3.A.1.135.9 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_505 | ShaoY_2019_ERR3405831_bin.2_k141_505_18 | 36535 | 38271 | - | 3.A.1.135.9 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_4
Type: TC
Location: 3000 - 4742 (-)
Type: TC
Location: 3000 - 4742 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_5
Type: TC
Location: 4981 - 6378 (+)
Type: TC
Location: 4981 - 6378 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_6
Type: TC
Location: 6471 - 7343 (+)
Type: TC
Location: 6471 - 7343 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_7
Type: TC
Location: 7343 - 8170 (+)
Type: TC
Location: 7343 - 8170 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_8
Type: CAZyme
Location: 8185 - 15036 (+)
Type: CAZyme
Location: 8185 - 15036 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_9
Type: CAZyme
Location: 15173 - 21775 (+)
Type: CAZyme
Location: 15173 - 21775 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_10
Type: pfam
Location: 21920 - 22894 (-)
Type: pfam
Location: 21920 - 22894 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_11
Type: TC
Location: 23205 - 24944 (+)
Type: TC
Location: 23205 - 24944 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_12
Type: TC
Location: 24941 - 26734 (+)
Type: TC
Location: 24941 - 26734 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_13
Type: TF
Location: 27008 - 27895 (-)
Type: TF
Location: 27008 - 27895 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_14
Type: CAZyme
Location: 28238 - 31033 (+)
Type: CAZyme
Location: 28238 - 31033 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_15
Type: CAZyme
Location: 31221 - 33668 (+)
Type: CAZyme
Location: 31221 - 33668 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_16
Type: pfam
Location: 33872 - 34579 (+)
Type: pfam
Location: 33872 - 34579 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_17
Type: TC
Location: 34706 - 36538 (-)
Type: TC
Location: 34706 - 36538 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_505_18
Type: TC
Location: 36535 - 38271 (-)
Type: TC
Location: 36535 - 38271 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.