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Cluster: ShaoY_2019_ERR3405779_bin.1_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_21 20517 21767 + 2.A.1.46.5
peptidase ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_22 21982 23205 - M20.UPB
TC ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_23 23449 25386 + 2.A.67.4.2
TC ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_24 25755 26540 + 3.A.1.3.17
pfam ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_25 26616 27641 + S-methyl_trans
CAZyme ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_26 27917 29389 - GT83
TC ShaoY_2019_ERR3405779_bin.1_k141_3288 ShaoY_2019_ERR3405779_bin.1_k141_3288_27 29422 30051 - 9.B.105.1.3
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_21
Type: TC
Location: 20517 - 21767 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_22
Type: peptidase
Location: 21982 - 23205 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_23
Type: TC
Location: 23449 - 25386 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_24
Type: TC
Location: 25755 - 26540 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_25
Type: pfam
Location: 26616 - 27641 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_26
Type: CAZyme
Location: 27917 - 29389 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_27
Type: TC
Location: 29422 - 30051 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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