Cluster: ShaoY_2019_ERR3405779_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405779_bin.1
- CGC Family ID: CGCFAM_09065
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405779_bin.1_k141_3288 | ShaoY_2019_ERR3405779_bin.1_k141_3288_10 | 7715 | 9058 | + | 2.A.103.1.3 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_3288 | ShaoY_2019_ERR3405779_bin.1_k141_3288_11 | 9168 | 10451 | + | 2.A.40.1.1 |
| TF | ShaoY_2019_ERR3405779_bin.1_k141_3288 | ShaoY_2019_ERR3405779_bin.1_k141_3288_12 | 10751 | 11200 | + | Pencillinase_R |
| CAZyme | ShaoY_2019_ERR3405779_bin.1_k141_3288 | ShaoY_2019_ERR3405779_bin.1_k141_3288_13 | 11218 | 12660 | + | AA1 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_3288 | ShaoY_2019_ERR3405779_bin.1_k141_3288_14 | 13047 | 15251 | + | 3.A.3.5.16 |
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_10
Type: TC
Location: 7715 - 9058 (+)
Type: TC
Location: 7715 - 9058 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_11
Type: TC
Location: 9168 - 10451 (+)
Type: TC
Location: 9168 - 10451 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_12
Type: TF
Location: 10751 - 11200 (+)
Type: TF
Location: 10751 - 11200 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_13
Type: CAZyme
Location: 11218 - 12660 (+)
Type: CAZyme
Location: 11218 - 12660 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_3288_14
Type: TC
Location: 13047 - 15251 (+)
Type: TC
Location: 13047 - 15251 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Species
Veillonella sp018367495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.