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Cluster: ShaoY_2019_ERR3405779_bin.1_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_45 47391 48944 - 3.A.1.5.3
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_46 49225 50040 - 3.A.1.5.12
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_47 50033 50830 - 3.A.1.5.25
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_48 50843 52408 - 3.A.1.5.3
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_49 52493 53314 - 3.A.1.5.38
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_50 53314 54252 - 3.A.1.5.11
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_51 54959 56293 - 2.A.3.2.1
pfam ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_52 56919 58346 - Lyase_1 | ASL_C2
pfam ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_53 58346 59557 - Arginosuc_synth | Arginosuc_syn_C
CAZyme ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_54 59822 60598 - GT51
pfam ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_55 60981 61259 + Trns_repr_metal
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_56 61429 61689 - 8.A.8.1.1
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_57 61839 63566 - 8.A.7.1.1
pfam ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_58 63762 64595 + DAP_epimerase | DAP_epimerase | Pro_racemase
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_59 64657 65994 + 2.A.35.1.2
STP ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_60 66022 66936 + PfkB
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_61 66970 68937 + 4.A.2.1.4
TC ShaoY_2019_ERR3405779_bin.1_k141_2735 ShaoY_2019_ERR3405779_bin.1_k141_2735_62 69140 72412 - 1.B.40.2.2
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_45
Type: TC
Location: 47391 - 48944 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_46
Type: TC
Location: 49225 - 50040 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_47
Type: TC
Location: 50033 - 50830 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_48
Type: TC
Location: 50843 - 52408 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_49
Type: TC
Location: 52493 - 53314 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_50
Type: TC
Location: 53314 - 54252 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_51
Type: TC
Location: 54959 - 56293 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_52
Type: pfam
Location: 56919 - 58346 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_53
Type: pfam
Location: 58346 - 59557 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_54
Type: CAZyme
Location: 59822 - 60598 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_55
Type: pfam
Location: 60981 - 61259 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_56
Type: TC
Location: 61429 - 61689 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_57
Type: TC
Location: 61839 - 63566 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_58
Type: pfam
Location: 63762 - 64595 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_59
Type: TC
Location: 64657 - 65994 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_60
Type: STP
Location: 66022 - 66936 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_61
Type: TC
Location: 66970 - 68937 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_2735_62
Type: TC
Location: 69140 - 72412 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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