Cluster: ShaoY_2019_ERR3405779_bin.1_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405779_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4840 | ShaoY_2019_ERR3405779_bin.1_k141_4840_63 | 65402 | 66631 | + | 3.A.11.1.3 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4840 | ShaoY_2019_ERR3405779_bin.1_k141_4840_64 | 66621 | 69020 | + | 3.A.7.7.1 |
| STP | ShaoY_2019_ERR3405779_bin.1_k141_4840 | ShaoY_2019_ERR3405779_bin.1_k141_4840_65 | 69013 | 70329 | + | Pyr_redox_2 |
| pfam | ShaoY_2019_ERR3405779_bin.1_k141_4840 | ShaoY_2019_ERR3405779_bin.1_k141_4840_66 | 70444 | 71268 | - | LGT |
| CAZyme | ShaoY_2019_ERR3405779_bin.1_k141_4840 | ShaoY_2019_ERR3405779_bin.1_k141_4840_67 | 71421 | 73136 | + | GH18 |
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4840_63
Type: TC
Location: 65402 - 66631 (+)
Type: TC
Location: 65402 - 66631 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4840_64
Type: TC
Location: 66621 - 69020 (+)
Type: TC
Location: 66621 - 69020 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4840_65
Type: STP
Location: 69013 - 70329 (+)
Type: STP
Location: 69013 - 70329 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4840_66
Type: pfam
Location: 70444 - 71268 (-)
Type: pfam
Location: 70444 - 71268 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4840_67
Type: CAZyme
Location: 71421 - 73136 (+)
Type: CAZyme
Location: 71421 - 73136 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Species
Veillonella sp018367495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.