Cluster: ShaoY_2019_ERR3405779_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405779_bin.1
- CGC Family ID: CGCFAM_00394
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_346 | 370068 | 370718 | - | 2.A.38.4.4 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_347 | 370753 | 372114 | - | 2.A.38.4.3 |
| STP | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_348 | 372119 | 373117 | - | PfkB |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_349 | 373333 | 374700 | - | 4.A.7.1.4 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_350 | 374732 | 375007 | - | 4.A.7.1.2 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_351 | 375020 | 375484 | - | 4.A.7.1.1 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_352 | 375842 | 376849 | + | 3.A.1.14.1 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_353 | 376876 | 377622 | + | 3.A.1.14.8 |
| STP | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_354 | 377643 | 378647 | + | Peripla_BP_2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_355 | 378886 | 379059 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_356 | 379478 | 380476 | - | 2.A.20.1.7 |
| pfam | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_357 | 380469 | 381098 | - | PhoU_div |
| STP | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_358 | 381381 | 382847 | - | Fer4 |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_359 | 382981 | 384996 | - | 3.A.1.120.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_360 | 385111 | 385431 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_361 | 385612 | 386766 | - | GT28 |
| pfam | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_362 | 386849 | 387148 | - | Bac_DNA_binding | HU-HIG |
| pfam | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_363 | 387200 | 387982 | - | PRA-PH | MazG | MazG |
| TC | ShaoY_2019_ERR3405779_bin.1_k141_4196 | ShaoY_2019_ERR3405779_bin.1_k141_4196_364 | 387966 | 389573 | - | 2.A.66.2.14 |
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_346
Type: TC
Location: 370068 - 370718 (-)
Type: TC
Location: 370068 - 370718 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_347
Type: TC
Location: 370753 - 372114 (-)
Type: TC
Location: 370753 - 372114 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_348
Type: STP
Location: 372119 - 373117 (-)
Type: STP
Location: 372119 - 373117 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_349
Type: TC
Location: 373333 - 374700 (-)
Type: TC
Location: 373333 - 374700 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_350
Type: TC
Location: 374732 - 375007 (-)
Type: TC
Location: 374732 - 375007 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_351
Type: TC
Location: 375020 - 375484 (-)
Type: TC
Location: 375020 - 375484 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_352
Type: TC
Location: 375842 - 376849 (+)
Type: TC
Location: 375842 - 376849 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_353
Type: TC
Location: 376876 - 377622 (+)
Type: TC
Location: 376876 - 377622 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_354
Type: STP
Location: 377643 - 378647 (+)
Type: STP
Location: 377643 - 378647 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_355
Type:
Location: 378886 - 379059 (-)
Type:
Location: 378886 - 379059 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_356
Type: TC
Location: 379478 - 380476 (-)
Type: TC
Location: 379478 - 380476 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_357
Type: pfam
Location: 380469 - 381098 (-)
Type: pfam
Location: 380469 - 381098 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_358
Type: STP
Location: 381381 - 382847 (-)
Type: STP
Location: 381381 - 382847 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_359
Type: TC
Location: 382981 - 384996 (-)
Type: TC
Location: 382981 - 384996 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_360
Type:
Location: 385111 - 385431 (+)
Type:
Location: 385111 - 385431 (+)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_361
Type: CAZyme
Location: 385612 - 386766 (-)
Type: CAZyme
Location: 385612 - 386766 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_362
Type: pfam
Location: 386849 - 387148 (-)
Type: pfam
Location: 386849 - 387148 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_363
Type: pfam
Location: 387200 - 387982 (-)
Type: pfam
Location: 387200 - 387982 (-)
Gene ID: ShaoY_2019_ERR3405779_bin.1_k141_4196_364
Type: TC
Location: 387966 - 389573 (-)
Type: TC
Location: 387966 - 389573 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Species
Veillonella sp018367495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.