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Cluster: ShaoY_2019_ERR3405726_bin.1_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_2 796 1800 + GT113
TC ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_3 2187 3242 + 3.A.5.10.1
TC ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_4 3251 4840 + 3.A.5.10.1
TC ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_5 4833 6377 + 3.A.5.10.1
pfam ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_6 6374 6844 + Sec-ASP3
TC ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_7 6876 9254 + 3.A.5.10.1
CAZyme ShaoY_2019_ERR3405726_bin.1_k141_958 ShaoY_2019_ERR3405726_bin.1_k141_958_8 9266 10780 + GT4
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_2
Type: CAZyme
Location: 796 - 1800 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_3
Type: TC
Location: 2187 - 3242 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_4
Type: TC
Location: 3251 - 4840 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_5
Type: TC
Location: 4833 - 6377 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_6
Type: pfam
Location: 6374 - 6844 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_7
Type: TC
Location: 6876 - 9254 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_958_8
Type: CAZyme
Location: 9266 - 10780 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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