Cluster: ShaoY_2019_ERR3405726_bin.1_CGC21
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: ShaoY_2019_ERR3405726_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_10 | 8228 | 9610 | + | CE4 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_11 | 9654 | 10739 | - | 1.I.1.1.3 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_12 | 10736 | 11716 | - | GFO_IDH_MocA |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_13 | 11844 | 12554 | + | GT2 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_14 | 12556 | 12891 | + | DUF2304 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_15 | 12881 | 14158 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_16 | 14142 | 14924 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_17 | 15024 | 15998 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_18 | 16055 | 16981 | + | GT2 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_19 | 17047 | 17898 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_20 | 18005 | 19153 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_21 | 19150 | 20091 | + | GT2 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_22 | 20091 | 20897 | + | ABC2_membrane |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_23 | 20897 | 22120 | + | 3.A.1.103.5 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_949 | ShaoY_2019_ERR3405726_bin.1_k141_949_24 | 22133 | 23482 | + | GT2 |
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_10
Type: CAZyme
Location: 8228 - 9610 (+)
Type: CAZyme
Location: 8228 - 9610 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_11
Type: TC
Location: 9654 - 10739 (-)
Type: TC
Location: 9654 - 10739 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_12
Type: pfam
Location: 10736 - 11716 (-)
Type: pfam
Location: 10736 - 11716 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_13
Type: CAZyme
Location: 11844 - 12554 (+)
Type: CAZyme
Location: 11844 - 12554 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_14
Type: pfam
Location: 12556 - 12891 (+)
Type: pfam
Location: 12556 - 12891 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_15
Type:
Location: 12881 - 14158 (+)
Type:
Location: 12881 - 14158 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_16
Type: CAZyme
Location: 14142 - 14924 (+)
Type: CAZyme
Location: 14142 - 14924 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_17
Type: CAZyme
Location: 15024 - 15998 (+)
Type: CAZyme
Location: 15024 - 15998 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_18
Type: CAZyme
Location: 16055 - 16981 (+)
Type: CAZyme
Location: 16055 - 16981 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_19
Type: pfam
Location: 17047 - 17898 (+)
Type: pfam
Location: 17047 - 17898 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_20
Type: CAZyme
Location: 18005 - 19153 (+)
Type: CAZyme
Location: 18005 - 19153 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_21
Type: CAZyme
Location: 19150 - 20091 (+)
Type: CAZyme
Location: 19150 - 20091 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_22
Type: pfam
Location: 20091 - 20897 (+)
Type: pfam
Location: 20091 - 20897 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_23
Type: TC
Location: 20897 - 22120 (+)
Type: TC
Location: 20897 - 22120 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_949_24
Type: CAZyme
Location: 22133 - 23482 (+)
Type: CAZyme
Location: 22133 - 23482 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus parasanguinis_H
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.