Cluster: ShaoY_2019_ERR3405726_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3405726_bin.1
- CGC Family ID: CGCFAM_00598
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_9 | 10575 | 11270 | + | 8.A.3.2.3 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_10 | 11283 | 11975 | + | 8.A.3.2.2 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_11 | 11995 | 13371 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_12 | 13410 | 14582 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_13 | 14585 | 15733 | + | GT4 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_14 | 15735 | 16376 | + | DUF1919 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_15 | 16373 | 17344 | + | DUF6625 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_16 | 17337 | 18407 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_17 | 18441 | 19589 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_18 | 19586 | 21004 | + | 2.A.66.2.16 |
| STP | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_19 | 21016 | 22116 | + | Pyr_redox |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_20 | 22113 | 23105 | + | Stealth_CR2 | Stealth_CR1 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_21 | 23116 | 24168 | + | GT113 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_22 | 24313 | 27780 | + | GH25 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_23 | 27924 | 30698 | + | CHAP | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_24 | 31094 | 31957 | - | PseudoU_synth_2 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_874 | ShaoY_2019_ERR3405726_bin.1_k141_874_25 | 32061 | 34295 | + | GT51 |
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_9
Type: TC
Location: 10575 - 11270 (+)
Type: TC
Location: 10575 - 11270 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_10
Type: TC
Location: 11283 - 11975 (+)
Type: TC
Location: 11283 - 11975 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_11
Type: TC
Location: 11995 - 13371 (+)
Type: TC
Location: 11995 - 13371 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_12
Type: CAZyme
Location: 13410 - 14582 (+)
Type: CAZyme
Location: 13410 - 14582 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_13
Type: CAZyme
Location: 14585 - 15733 (+)
Type: CAZyme
Location: 14585 - 15733 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_14
Type: pfam
Location: 15735 - 16376 (+)
Type: pfam
Location: 15735 - 16376 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_15
Type: pfam
Location: 16373 - 17344 (+)
Type: pfam
Location: 16373 - 17344 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_16
Type: CAZyme
Location: 17337 - 18407 (+)
Type: CAZyme
Location: 17337 - 18407 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_17
Type:
Location: 18441 - 19589 (+)
Type:
Location: 18441 - 19589 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_18
Type: TC
Location: 19586 - 21004 (+)
Type: TC
Location: 19586 - 21004 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_19
Type: STP
Location: 21016 - 22116 (+)
Type: STP
Location: 21016 - 22116 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_20
Type: pfam
Location: 22113 - 23105 (+)
Type: pfam
Location: 22113 - 23105 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_21
Type: CAZyme
Location: 23116 - 24168 (+)
Type: CAZyme
Location: 23116 - 24168 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_22
Type: CAZyme
Location: 24313 - 27780 (+)
Type: CAZyme
Location: 24313 - 27780 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_23
Type: pfam
Location: 27924 - 30698 (+)
Type: pfam
Location: 27924 - 30698 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_24
Type: pfam
Location: 31094 - 31957 (-)
Type: pfam
Location: 31094 - 31957 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_874_25
Type: CAZyme
Location: 32061 - 34295 (+)
Type: CAZyme
Location: 32061 - 34295 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus parasanguinis_H
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.