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Cluster: ShaoY_2019_ERR3405726_bin.1_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_6 4114 5760 - 8.A.59.2.1
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_7 5763 6374 - 9.B.28.1.12
STP ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_8 6544 8025 - SBP_bac_1
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_9 8104 9036 - 3.A.1.1.29
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_10 9050 9979 - 3.A.1.1.10
CAZyme ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_11 10205 12085 - GH20
pfam ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_12 12079 12948 - ROK
CAZyme ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_13 13035 15680 - GH38
CAZyme ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_14 15755 17035 - GH125
CAZyme ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_15 17251 19326 + GH92
pfam ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_16 19518 20075 - DUF6287
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_17 20207 21715 - 3.A.1.15.3
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_18 21718 22521 - 3.A.1.15.3
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_19 22514 23218 - 3.A.1.15.3
TF ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_20 23220 23657 - MarR
TC ShaoY_2019_ERR3405726_bin.1_k141_671 ShaoY_2019_ERR3405726_bin.1_k141_671_21 24484 25215 + 3.A.1.125.3
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_6
Type: TC
Location: 4114 - 5760 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_7
Type: TC
Location: 5763 - 6374 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_8
Type: STP
Location: 6544 - 8025 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_9
Type: TC
Location: 8104 - 9036 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_10
Type: TC
Location: 9050 - 9979 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_11
Type: CAZyme
Location: 10205 - 12085 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_12
Type: pfam
Location: 12079 - 12948 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_13
Type: CAZyme
Location: 13035 - 15680 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_14
Type: CAZyme
Location: 15755 - 17035 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_15
Type: CAZyme
Location: 17251 - 19326 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_16
Type: pfam
Location: 19518 - 20075 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_17
Type: TC
Location: 20207 - 21715 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_18
Type: TC
Location: 21718 - 22521 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_19
Type: TC
Location: 22514 - 23218 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_20
Type: TF
Location: 23220 - 23657 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_671_21
Type: TC
Location: 24484 - 25215 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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