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Cluster: ShaoY_2019_ERR3405641_bin.1_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_15 9334 10848 - GT4
TC ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_16 10860 13238 - 3.A.5.10.1
pfam ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_17 13269 13739 - Sec-ASP3
TC ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_18 13736 15217 - 3.A.5.10.1
TC ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_19 15273 16862 - 3.A.5.10.1
TC ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_20 16871 18088 - 3.A.5.10.1
CAZyme ShaoY_2019_ERR3405641_bin.1_k141_3279 ShaoY_2019_ERR3405641_bin.1_k141_3279_21 18310 19314 - GT113
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_15
Type: CAZyme
Location: 9334 - 10848 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_16
Type: TC
Location: 10860 - 13238 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_17
Type: pfam
Location: 13269 - 13739 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_18
Type: TC
Location: 13736 - 15217 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_19
Type: TC
Location: 15273 - 16862 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_20
Type: TC
Location: 16871 - 18088 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3279_21
Type: CAZyme
Location: 18310 - 19314 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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