Cluster: ShaoY_2019_ERR3405630_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405630_bin.1
- CGC Family ID: CGCFAM_00401
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_4 | 3805 | 4455 | - | 9.B.28.1.4 |
| pfam | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_5 | 4476 | 4928 | - | DUF386 |
| TC | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_6 | 5296 | 6138 | - | 3.A.1.1.34 |
| TC | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_7 | 6154 | 7041 | - | 3.A.1.1.20 |
| STP | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_8 | 7254 | 8579 | - | SBP_bac_1 |
| pfam | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_9 | 8697 | 9395 | - | NanE |
| CAZyme | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_10 | 9689 | 12943 | - | CBM40 | GH33 |
| CAZyme | ShaoY_2019_ERR3405630_bin.1_k141_1626 | ShaoY_2019_ERR3405630_bin.1_k141_1626_11 | 13538 | 16219 | - | GH33 |
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_4
Type: TC
Location: 3805 - 4455 (-)
Type: TC
Location: 3805 - 4455 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_5
Type: pfam
Location: 4476 - 4928 (-)
Type: pfam
Location: 4476 - 4928 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_6
Type: TC
Location: 5296 - 6138 (-)
Type: TC
Location: 5296 - 6138 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_7
Type: TC
Location: 6154 - 7041 (-)
Type: TC
Location: 6154 - 7041 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_8
Type: STP
Location: 7254 - 8579 (-)
Type: STP
Location: 7254 - 8579 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_9
Type: pfam
Location: 8697 - 9395 (-)
Type: pfam
Location: 8697 - 9395 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_10
Type: CAZyme
Location: 9689 - 12943 (-)
Type: CAZyme
Location: 9689 - 12943 (-)
Gene ID: ShaoY_2019_ERR3405630_bin.1_k141_1626_11
Type: CAZyme
Location: 13538 - 16219 (-)
Type: CAZyme
Location: 13538 - 16219 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.