dbCAN HGM

Cluster: ShaoY_2019_ERR3405592_bin.2_CGC8

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 22
CAZyme Count: 5
Substrate:
Genome ID: ShaoY_2019_ERR3405592_bin.2
CGC Family ID: CGCFAM_00402
Continent: Europe
Source Study: Zeng et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_256	266317	267369	-	GT113
STP	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_257	267397	268500	-	Pyr_redox
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_258	268513	269511	-	9.B.97.1.1
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_259	269513	270928	-	2.A.66.2.16
NULL(UNKNOWN)	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_260	270976	272151	-	NULL(UNKNOWN) [View Structural Homologs]
NULL(UNKNOWN)	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_261	272301	272435	-	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_262	272560	273522	-	GT2
pfam	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_263	273556	274557	-	Stealth_CR2 \| Stealth_CR1 \| Stealth_CR3
pfam	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_264	274572	275573	-	Glyco_trans_1_4
CAZyme	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_265	275582	276733	-	GT4
CAZyme	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_266	276737	277909	-	GT4
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_267	277940	279307	-	9.B.18.1.2
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_268	279330	280022	-	8.A.3.2.2
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_269	280032	280724	-	8.A.3.2.3
pfam	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_270	280733	281464	-	CpsB_CapC
pfam	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_271	281466	282911	-	DNA_PPF \| LytR_cpsA_psr
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_272	283103	285064	-	3.A.1.5.19
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_273	285212	287179	-	3.A.1.5.25
CAZyme	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_274	287349	288959	-	GH13_31
pfam	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_275	289112	290596	+	DUF1846 \| DUF1846_C
pfam	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_276	290688	291170	+	LuxS
TC	ShaoY_2019_ERR3405592_bin.2_k141_1327	ShaoY_2019_ERR3405592_bin.2_k141_1327_277	291225	293330	-	3.A.9.1.2

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_256
Type: CAZyme
Location: 266317 - 267369 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_257
Type: STP
Location: 267397 - 268500 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_258
Type: TC
Location: 268513 - 269511 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_259
Type: TC
Location: 269513 - 270928 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_260
Type:
Location: 270976 - 272151 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_261
Type:
Location: 272301 - 272435 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_262
Type: CAZyme
Location: 272560 - 273522 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_263
Type: pfam
Location: 273556 - 274557 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_264
Type: pfam
Location: 274572 - 275573 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_265
Type: CAZyme
Location: 275582 - 276733 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_266
Type: CAZyme
Location: 276737 - 277909 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_267
Type: TC
Location: 277940 - 279307 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_268
Type: TC
Location: 279330 - 280022 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_269
Type: TC
Location: 280032 - 280724 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_270
Type: pfam
Location: 280733 - 281464 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_271
Type: pfam
Location: 281466 - 282911 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_272
Type: TC
Location: 283103 - 285064 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_273
Type: TC
Location: 285212 - 287179 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_274
Type: CAZyme
Location: 287349 - 288959 (-)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_275
Type: pfam
Location: 289112 - 290596 (+)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_276
Type: pfam
Location: 290688 - 291170 (+)

Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1327_277
Type: TC
Location: 291225 - 293330 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacillota

→

Class

Bacilli

→

Order

Lactobacillales

→

Family

Streptococcaceae

→

Genus

Streptococcus

→

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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