Cluster: ShaoY_2019_ERR3405592_bin.2_CGC21
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405592_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_174 | 173541 | 174464 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_175 | 174478 | 175407 | - | 3.A.1.1.10 |
| CAZyme | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_176 | 175608 | 177488 | - | GH20 |
| pfam | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_177 | 177482 | 178351 | - | ROK |
| CAZyme | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_178 | 178450 | 181095 | - | GH38 |
| CAZyme | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_179 | 181185 | 182465 | - | GH125 |
| CAZyme | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_180 | 182636 | 184723 | + | GH92 |
| CAZyme | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_181 | 184760 | 186439 | - | GH29 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_182 | 186964 | 188469 | - | 3.A.1.15.3 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_183 | 188479 | 189285 | - | 3.A.1.15.3 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1493 | ShaoY_2019_ERR3405592_bin.2_k141_1493_184 | 189278 | 189982 | - | 3.A.1.15.3 |
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_174
Type: TC
Location: 173541 - 174464 (-)
Type: TC
Location: 173541 - 174464 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_175
Type: TC
Location: 174478 - 175407 (-)
Type: TC
Location: 174478 - 175407 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_176
Type: CAZyme
Location: 175608 - 177488 (-)
Type: CAZyme
Location: 175608 - 177488 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_177
Type: pfam
Location: 177482 - 178351 (-)
Type: pfam
Location: 177482 - 178351 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_178
Type: CAZyme
Location: 178450 - 181095 (-)
Type: CAZyme
Location: 178450 - 181095 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_179
Type: CAZyme
Location: 181185 - 182465 (-)
Type: CAZyme
Location: 181185 - 182465 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_180
Type: CAZyme
Location: 182636 - 184723 (+)
Type: CAZyme
Location: 182636 - 184723 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_181
Type: CAZyme
Location: 184760 - 186439 (-)
Type: CAZyme
Location: 184760 - 186439 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_182
Type: TC
Location: 186964 - 188469 (-)
Type: TC
Location: 186964 - 188469 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_183
Type: TC
Location: 188479 - 189285 (-)
Type: TC
Location: 188479 - 189285 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1493_184
Type: TC
Location: 189278 - 189982 (-)
Type: TC
Location: 189278 - 189982 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.