Cluster: ShaoY_2019_ERR3405592_bin.2_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405592_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405592_bin.2_k141_1464 | ShaoY_2019_ERR3405592_bin.2_k141_1464_38 | 38108 | 39895 | + | GH35 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1464 | ShaoY_2019_ERR3405592_bin.2_k141_1464_39 | 39892 | 40368 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1464 | ShaoY_2019_ERR3405592_bin.2_k141_1464_40 | 40395 | 41300 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1464 | ShaoY_2019_ERR3405592_bin.2_k141_1464_41 | 41287 | 42108 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3405592_bin.2_k141_1464 | ShaoY_2019_ERR3405592_bin.2_k141_1464_42 | 42112 | 42516 | + | 4.A.6.1.18 |
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1464_38
Type: CAZyme
Location: 38108 - 39895 (+)
Type: CAZyme
Location: 38108 - 39895 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1464_39
Type: TC
Location: 39892 - 40368 (+)
Type: TC
Location: 39892 - 40368 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1464_40
Type: TC
Location: 40395 - 41300 (+)
Type: TC
Location: 40395 - 41300 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1464_41
Type: TC
Location: 41287 - 42108 (+)
Type: TC
Location: 41287 - 42108 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_1464_42
Type: TC
Location: 42112 - 42516 (+)
Type: TC
Location: 42112 - 42516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405592_bin.2_k141_1464_41 | vegan > omnivore | 1.54120 | 0.01604 |