Cluster: ShaoY_2019_ERR3405591_bin.6_CGC10
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405591_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_44 | 43473 | 44441 | - | 2.A.58.2.2 |
| CAZyme | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_45 | 44649 | 45269 | + | CBM50 |
| TF | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_46 | 45369 | 45641 | - | HTH_3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_47 | 45743 | 46057 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_48 | 46492 | 48396 | - | 3.A.1.135.6 |
| TC | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_49 | 48393 | 50609 | - | 3.A.1.135.6 |
| TF | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_50 | 50606 | 51139 | - | MarR |
| pfam | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_51 | 51422 | 51976 | - | DUF4358 |
| TC | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_52 | 52080 | 53063 | + | 3.A.1.15.11 |
| TC | ShaoY_2019_ERR3405591_bin.6_k141_3552 | ShaoY_2019_ERR3405591_bin.6_k141_3552_53 | 53087 | 57283 | + | 2.A.6.3.6 |
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_44
Type: TC
Location: 43473 - 44441 (-)
Type: TC
Location: 43473 - 44441 (-)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_45
Type: CAZyme
Location: 44649 - 45269 (+)
Type: CAZyme
Location: 44649 - 45269 (+)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_46
Type: TF
Location: 45369 - 45641 (-)
Type: TF
Location: 45369 - 45641 (-)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_47
Type:
Location: 45743 - 46057 (+)
Type:
Location: 45743 - 46057 (+)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_48
Type: TC
Location: 46492 - 48396 (-)
Type: TC
Location: 46492 - 48396 (-)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_49
Type: TC
Location: 48393 - 50609 (-)
Type: TC
Location: 48393 - 50609 (-)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_50
Type: TF
Location: 50606 - 51139 (-)
Type: TF
Location: 50606 - 51139 (-)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_51
Type: pfam
Location: 51422 - 51976 (-)
Type: pfam
Location: 51422 - 51976 (-)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_52
Type: TC
Location: 52080 - 53063 (+)
Type: TC
Location: 52080 - 53063 (+)
Gene ID: ShaoY_2019_ERR3405591_bin.6_k141_3552_53
Type: TC
Location: 53087 - 57283 (+)
Type: TC
Location: 53087 - 57283 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scatavimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.