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Cluster: ShaoY_2019_ERR3405525_bin.6_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_4 6954 8561 + 2.A.66.2.14
pfam ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_5 8545 9327 + PRA-PH | MazG | MazG
pfam ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_6 9379 9678 + Bac_DNA_binding | HU-HIG
CAZyme ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_7 9761 10915 + GT28
NULL(UNKNOWN) ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_8 10969 11289 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_9 11402 13408 + 3.A.1.120.6
STP ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_10 13541 15010 + Fer4
pfam ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_11 15355 15984 + PhoU_div
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_12 15977 16975 + 2.A.20.1.7
NULL(UNKNOWN) ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_13 17392 17565 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_14 17857 18321 + 4.A.7.1.1
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_15 18334 18609 + 4.A.7.1.2
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_16 18639 20006 + 4.A.7.1.4
pfam ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_17 20006 20401 + DUF454
TF ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_18 20723 21571 + HTH_AraC
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_19 21753 26840 + 1.B.14.1.4
TC ShaoY_2019_ERR3405525_bin.6_k141_3101 ShaoY_2019_ERR3405525_bin.6_k141_3101_20 26876 27493 + 1.A.30.2.4
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_4
Type: TC
Location: 6954 - 8561 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_5
Type: pfam
Location: 8545 - 9327 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_6
Type: pfam
Location: 9379 - 9678 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_7
Type: CAZyme
Location: 9761 - 10915 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_8
Type:
Location: 10969 - 11289 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_9
Type: TC
Location: 11402 - 13408 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_10
Type: STP
Location: 13541 - 15010 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_11
Type: pfam
Location: 15355 - 15984 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_12
Type: TC
Location: 15977 - 16975 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_13
Type:
Location: 17392 - 17565 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_14
Type: TC
Location: 17857 - 18321 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_15
Type: TC
Location: 18334 - 18609 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_16
Type: TC
Location: 18639 - 20006 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_17
Type: pfam
Location: 20006 - 20401 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_18
Type: TF
Location: 20723 - 21571 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_19
Type: TC
Location: 21753 - 26840 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_3101_20
Type: TC
Location: 26876 - 27493 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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