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Cluster: ShaoY_2019_ERR3405525_bin.6_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_30 28749 30302 - 3.A.1.5.3
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_31 30564 31376 - 3.A.1.5.12
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_32 31369 32166 - 3.A.1.5.25
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_33 32179 33747 - 3.A.1.5.3
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_34 33897 34718 - 3.A.1.5.11
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_35 34718 35656 - 3.A.1.5.11
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_36 36400 37731 - 2.A.3.2.1
pfam ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_37 38268 39695 - Lyase_1 | ASL_C2
pfam ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_38 39695 40906 - Arginosuc_synth | Arginosuc_syn_C
CAZyme ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_39 41173 41979 - GT51
pfam ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_40 42317 42595 + Trns_repr_metal
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_41 42677 42937 - 8.A.8.1.1
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_42 43094 44821 - 8.A.7.1.1
pfam ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_43 44997 45830 + DAP_epimerase | DAP_epimerase | Pro_racemase
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_44 45892 47229 + 2.A.35.1.2
STP ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_45 47309 48223 + PfkB
TC ShaoY_2019_ERR3405525_bin.6_k141_2622 ShaoY_2019_ERR3405525_bin.6_k141_2622_46 48257 50239 + 4.A.2.1.4
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_30
Type: TC
Location: 28749 - 30302 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_31
Type: TC
Location: 30564 - 31376 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_32
Type: TC
Location: 31369 - 32166 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_33
Type: TC
Location: 32179 - 33747 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_34
Type: TC
Location: 33897 - 34718 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_35
Type: TC
Location: 34718 - 35656 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_36
Type: TC
Location: 36400 - 37731 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_37
Type: pfam
Location: 38268 - 39695 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_38
Type: pfam
Location: 39695 - 40906 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_39
Type: CAZyme
Location: 41173 - 41979 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_40
Type: pfam
Location: 42317 - 42595 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_41
Type: TC
Location: 42677 - 42937 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_42
Type: TC
Location: 43094 - 44821 (-)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_43
Type: pfam
Location: 44997 - 45830 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_44
Type: TC
Location: 45892 - 47229 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_45
Type: STP
Location: 47309 - 48223 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_2622_46
Type: TC
Location: 48257 - 50239 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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