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Cluster: ShaoY_2019_ERR3405525_bin.6_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405525_bin.6_k141_1535 ShaoY_2019_ERR3405525_bin.6_k141_1535_51 55692 56495 + CE4
pfam ShaoY_2019_ERR3405525_bin.6_k141_1535 ShaoY_2019_ERR3405525_bin.6_k141_1535_52 56507 57445 + NAGPA
NULL(UNKNOWN) ShaoY_2019_ERR3405525_bin.6_k141_1535 ShaoY_2019_ERR3405525_bin.6_k141_1535_53 57454 58395 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405525_bin.6_k141_1535 ShaoY_2019_ERR3405525_bin.6_k141_1535_54 58465 59637 + GT9
NULL(UNKNOWN) ShaoY_2019_ERR3405525_bin.6_k141_1535 ShaoY_2019_ERR3405525_bin.6_k141_1535_55 59624 59950 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405525_bin.6_k141_1535 ShaoY_2019_ERR3405525_bin.6_k141_1535_56 60479 61831 + 3.B.1.1.1
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_1535_51
Type: CAZyme
Location: 55692 - 56495 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_1535_52
Type: pfam
Location: 56507 - 57445 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_1535_53
Type:
Location: 57454 - 58395 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_1535_54
Type: CAZyme
Location: 58465 - 59637 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_1535_55
Type:
Location: 59624 - 59950 (+)
Gene ID: ShaoY_2019_ERR3405525_bin.6_k141_1535_56
Type: TC
Location: 60479 - 61831 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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