Cluster: ShaoY_2019_ERR3405254_bin.1_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- CGC Family ID: CGCFAM_01064
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_68 | 64027 | 64869 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_69 | 64871 | 66163 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_70 | 66274 | 67545 | - | 3.A.1.1.26 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_71 | 67963 | 69480 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_72 | 69503 | 71761 | + | GT35 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_73 | 72349 | 73197 | - | MTS | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_74 | 73349 | 73627 | + | DUF6110 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_75 | 73629 | 75689 | + | 3.A.3.32.6 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_68
Type: TC
Location: 64027 - 64869 (-)
Type: TC
Location: 64027 - 64869 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_69
Type: TC
Location: 64871 - 66163 (-)
Type: TC
Location: 64871 - 66163 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_70
Type: TC
Location: 66274 - 67545 (-)
Type: TC
Location: 66274 - 67545 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_71
Type: CAZyme
Location: 67963 - 69480 (+)
Type: CAZyme
Location: 67963 - 69480 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_72
Type: CAZyme
Location: 69503 - 71761 (+)
Type: CAZyme
Location: 69503 - 71761 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_73
Type: pfam
Location: 72349 - 73197 (-)
Type: pfam
Location: 72349 - 73197 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_74
Type: pfam
Location: 73349 - 73627 (+)
Type: pfam
Location: 73349 - 73627 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_75
Type: TC
Location: 73629 - 75689 (+)
Type: TC
Location: 73629 - 75689 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.