Cluster: ShaoY_2019_ERR3405254_bin.1_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_8 | 7021 | 10848 | - | GH20 | GH20 |
| TF | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_9 | 11120 | 11836 | - | GntR |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_10 | 12164 | 13951 | + | GH35 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_11 | 13948 | 14424 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_12 | 14451 | 15356 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_13 | 15343 | 16164 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1158 | ShaoY_2019_ERR3405254_bin.1_k141_1158_14 | 16168 | 16581 | + | 4.A.6.1.18 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_8
Type: CAZyme
Location: 7021 - 10848 (-)
Type: CAZyme
Location: 7021 - 10848 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_9
Type: TF
Location: 11120 - 11836 (-)
Type: TF
Location: 11120 - 11836 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_10
Type: CAZyme
Location: 12164 - 13951 (+)
Type: CAZyme
Location: 12164 - 13951 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_11
Type: TC
Location: 13948 - 14424 (+)
Type: TC
Location: 13948 - 14424 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_12
Type: TC
Location: 14451 - 15356 (+)
Type: TC
Location: 14451 - 15356 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_13
Type: TC
Location: 15343 - 16164 (+)
Type: TC
Location: 15343 - 16164 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1158_14
Type: TC
Location: 16168 - 16581 (+)
Type: TC
Location: 16168 - 16581 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.